Cyclophilin Phylogeny Datasets

The links below connect to the datasets used for phylogenetic analysis in Chou, I. T., and Gasser, C. S. (1997) Characterization of the cyclophilin gene family of Arabidopsis thaliana.and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol. (in press). Sources of the sequences are in Table 2 of Chou and Gasser (1997). The datasets are in Phylip format and can be viewed by simply clicking on the filename in your browser. To transfer the datasets to your computer mouse down on the links and select "Save this link as..." from the roll-down menu which appears.

Dataset of conserved regions of 106 cyclophilins and cyclophilin-related proteins from eubacteria and eukaryotes (used in construction of Fig. 7 of Chou and Gasser, 1997)is:

cyclo106.txt

Dataset of 92 cyclophilins and cyclophilin-related proteins from eukaryotes (used in construction of Fig. 8 and Fig. 9 of Chou and Gasser, 1997) is:

eukaryo.txt

Dataset of 13 cyclophilins eubacteria (analyzed but not used in preparation of a figure) is:

eubact.txt